Parallel Local Alignment Algorithm for Multiple Sequences on Heterogeneous Cluster Systems.
Xin CuiCheng ZhongXiangyan LuPublished in: PAAP (2010)
Keyphrases
- worst case
- parallel implementation
- computational complexity
- detection algorithm
- learning algorithm
- sequence alignment
- recognition algorithm
- k means
- computational cost
- dynamic programming
- optimal solution
- expectation maximization
- smith waterman
- hardware implementation
- optimization algorithm
- clustering algorithm
- cost function
- significant improvement
- similarity measure
- data structure
- association rules
- data clustering
- global alignment
- long sequences
- preprocessing
- parallel processing
- np hard
- matching algorithm
- search space
- evolutionary algorithm
- probabilistic model
- hidden markov models