CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.
Thomas WolfVladimir ShelestNeetika NathEkaterina ShelestPublished in: Bioinform. (2016)
Keyphrases
- gene clusters
- escherichia coli
- microarray data
- sequence data
- gene ontology
- binding sites
- gene expression analysis
- comparative genomics
- computational biology
- microarray
- transcription factors
- gene expression
- prediction accuracy
- microarray data analysis
- transcription factor binding sites
- dna sequences
- gene expression datasets
- microarray datasets
- gene sets
- protein protein interactions
- data mining
- gene selection
- ensemble methods
- semantic information
- pairwise