Sequence-based prediction of protein-peptide binding sites using support vector machine.
Ghazaleh TaherzadehYuedong YangTuo ZhangAlan Wee-Chung LiewYaoqi ZhouPublished in: J. Comput. Chem. (2016)
Keyphrases
- binding sites
- protein classification
- protein families
- remote homology detection
- sequence alignment
- psi blast
- transcription factor binding sites
- amino acids
- support vector machine
- statistical significance
- protein interaction
- protein sequences
- dna binding
- protein protein
- biological sequences
- influenza virus
- dna sequences
- gene expression
- sequence data
- transcription factors
- genome sequences
- protein structure prediction
- tandem mass spectra
- mhc class ii
- protein function
- predicting protein
- protein structure
- drosophila melanogaster
- regulatory elements
- motif discovery
- mass spectrometry
- secondary structure
- sequence analysis
- protein complexes
- regulatory networks
- computational biology
- pairwise
- gene ontology
- tandem mass spectrometry