Accelerating Scalar-Product Based Sequence Alignment using Graphics Processor Units.
Cem Savas BassoySvetlana TorgasinMei YangKarl-Heinz ZimmermannPublished in: J. Signal Process. Syst. (2010)
Keyphrases
- sequence alignment
- scalar product
- graphics processors
- privacy preserving
- pairwise
- dot product
- vertically partitioned data
- dynamic programming
- gpu implementation
- parallel algorithm
- amino acids
- protein sequences
- comparative genomics
- multiple alignment
- multiple sequence alignment
- machine learning
- real time
- binding sites
- similarity function
- cloud computing
- image features
- support vector