Inference of species phylogenies from bi-allelic markers using pseudo-likelihood.
Jiafan ZhuLuay NakhlehPublished in: Bioinform. (2018)
Keyphrases
- pseudo likelihood
- random fields
- bayes nets
- probabilistic graphical models
- markov networks
- phylogenetic trees
- markov logic networks
- maximum parsimony
- probabilistic inference
- graphical models
- markov chain monte carlo
- bayesian networks
- exact inference
- structured prediction
- log likelihood
- bayesian inference
- maximum entropy
- maximum likelihood
- conditional random fields
- first order logic
- markov random field
- maximum margin
- belief propagation
- statistical relational learning
- non stationary
- machine learning
- reasoning under uncertainty
- markov blanket
- parameter estimation
- probabilistic reasoning
- structure learning
- bayes net
- approximate inference