ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data.
Giorgos MinasHiroshi MomijiDafyd J. JenkinsMaria J. CostaDavid A. RandBärbel FinkenstädtPublished in: BMC Bioinform. (2017)
Keyphrases
- regulatory networks
- cellular processes
- saccharomyces cerevisiae
- cis regulatory
- gene expression
- microarray
- experimental conditions
- gene networks
- protein protein interactions
- gene expression data
- gene regulatory networks
- gene regulation
- sequence alignment
- protein protein interaction networks
- microarray data
- binding sites
- dna binding
- biological processes
- biological data
- interaction networks
- transcription factors
- gene ontology
- gene prediction
- cell cycle
- protein interaction
- genetic networks
- high throughput
- protein function
- transcriptional regulation
- signaling pathways
- biologically meaningful
- genome wide
- protein sequences
- gene function
- homo sapiens
- amino acids
- genomic sequences
- systems biology
- protein interaction networks
- protein structure prediction
- computational biology
- biological entities
- protein complexes
- sequence data
- computational methods
- nucleotide sequences
- reverse engineering