Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.
Alfredo Velasco IIBenjamin T. JamesVincent D. WellsHani Z. GirgisPublished in: Bioinform. (2020)
Keyphrases
- hidden markov models
- human genome
- tandem repeats
- markov models
- speech recognition
- sequence classification
- viterbi algorithm
- gesture recognition
- sequential data
- markov model
- dna sequences
- discriminative training
- dynamic programming
- hierarchical hidden markov model
- baum welch
- stochastic context free grammars
- conditional random fields
- hidden state
- pattern discovery
- random effects
- network structure
- continuous hidden markov models