Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs.
Joël LindeggerDamla Senol CaliMohammed AlserJuan Gómez-LunaNika Mansouri-GhiasiOnur MutluPublished in: CoRR (2022)
Keyphrases
- genomic sequences
- memory bandwidth
- parallel processing
- single instruction multiple data
- graphics processing units
- graphics processors
- computational power
- level parallelism
- floating point
- processing power
- memory access
- computing power
- general purpose
- dna sequences
- multi core systems
- parallel programming
- commodity hardware
- main memory
- data structure
- physical design
- databases
- multi core processors
- real time
- parallel implementation
- embedded systems
- associative memory