An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix.
Nicolas ChiaruttiniOlivier BurriPeter HaubRomain GuietJessica Sordet-DessimozArne SeitzPublished in: Frontiers Comput. Sci. (2021)
Keyphrases
- open source
- image registration
- open source software
- mutual information
- precision and recall
- high precision
- high recall
- image pairs
- workflow management systems
- source code
- coarse to fine
- affine transformation
- multi modality
- cellular automata
- petri net
- medical imaging
- average precision
- image alignment
- data sets
- business processes
- medical image registration
- case study
- image processing
- data flow
- computer vision
- workflow systems
- scientific workflows
- automatic image registration
- image mosaicking
- control flow
- business process
- pattern recognition
- web services
- feature selection
- neural network