Grabfast: A CUDA based GPU accelerated fast short sequence alignment algorithm.

Ankur Narang Jyothish Soman Sheetal Lahabar

Published in: HiPC (2012)

Keyphrases

gpu accelerated
sequence alignment
finite element
learning algorithm
dynamic programming
real time
multiple sequence alignment
pairwise
region of interest
structure from motion
levenberg marquardt
magnetic resonance images
convergence rate
multi dimensional
worst case
k means
similarity measure
genetic algorithm