Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.
Aaron Y. LeeCecilia S. LeeRussell N. Van GelderPublished in: BMC Bioinform. (2016)
Keyphrases
- sequence analysis
- sequence data
- genomic sequences
- sequence classification
- complete search
- sequence alignment
- decision trees
- dna sequences
- classification accuracy
- pattern recognition
- search space
- dynamic programming
- feature vectors
- multiple alignment
- feature space
- long sequences
- feature selection
- text classification
- psi blast
- rna secondary structures
- training set
- multiple sequence alignment
- support vector
- discrete hidden markov models
- memory efficient
- computational biology
- protein sequences
- support vector machine svm
- image classification
- support vector machine