A nearest neighbor approach for automated transporter prediction and categorization from protein sequences.
Haiquan LiXinbin DaiXuechun ZhaoPublished in: Bioinform. (2008)
Keyphrases
- protein sequences
- nearest neighbor
- protein secondary structure
- protein classification
- protein structure prediction
- computational biology
- multiple sequence alignments
- protein secondary structure prediction
- amino acids
- knn
- prediction accuracy
- protein structure
- experimentally determined
- k nearest neighbor
- remote homology detection
- multiple sequence alignment
- secondary structure
- biological sequences
- high dimensional
- protein structure and function
- protein function
- text categorization
- sequence analysis
- protein structural
- high dimensional data
- multiple alignment
- physico chemical
- molecular biology
- psi blast
- data points
- string kernels
- physicochemical properties
- amino acid sequences
- data sets
- training set