FPGA Acceleration of Sequence Alignment: A Survey.
Sahand SalamatTajana RosingPublished in: CoRR (2020)
Keyphrases
- sequence alignment
- pairwise
- hardware implementation
- high speed
- dynamic programming
- field programmable gate array
- hardware design
- hardware architecture
- amino acids
- protein sequences
- phylogenetic analysis
- low cost
- binding sites
- real time
- multiple alignment
- multiple sequence alignment
- comparative genomics
- signal processing
- gpu accelerated
- sequence databases
- protein structure prediction
- smith waterman
- data acquisition
- similarity measure
- genetic algorithm