Instrumenting Genomic Sequence Analysis Pipeline Mothur on Shared Memory Architecture.
Junqi YinBhanu RekepalliPragneshkumar B. PatelChanda DrennenAnnette Summers EngelPublished in: XSEDE (2014)
Keyphrases
- shared memory
- parallel architecture
- sequence analysis
- sequence data
- multi processor
- parallel algorithm
- message passing
- distributed memory
- parallel computing
- computational biology
- parallel computers
- graphic processing unit
- protein sequences
- memory access
- hardware implementation
- shared memory multiprocessor
- heterogeneous platforms
- markov random field
- shared memory multiprocessors
- multithreading
- parallel processing
- main memory
- high throughput
- database management systems