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An Optimal Implementation of the Approximate String Matching on the Hierarchical Memory Machine, with Performance Evaluation on the GPU.
Duhu Man
Koji Nakano
Yasuaki Ito
Published in:
IEICE Trans. Inf. Syst. (2014)
Keyphrases
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approximate string matching
single instruction multiple data
edit distance
genomic databases
dynamic programming
n gram
machine learning
data analysis
string matching
graphics processing units
databases
optimal solution
pairwise
multi dimensional