CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies.
Prakki SridattaNatascha ThevasagayamWeizhen XuKalisvar MarimuthuJeanette TeoIndumathi VenkatachalamNg TekPublished in: J. Open Source Softw. (2020)
Keyphrases
- lightweight
- sequenced genomes
- escherichia coli
- genomic sequences
- comparative genomics
- coding regions
- genome scale
- genome sequences
- metabolic pathways
- evolutionary history
- regulatory networks
- gene expression
- genome rearrangements
- high throughput sequencing
- dna sequences
- gene sets
- human genome
- gene expression data
- microarray data
- binding sites
- protein coding regions
- dos attacks
- gene regulatory networks
- sequence data
- gene expression levels
- regulatory elements
- communication infrastructure
- genome annotation
- transcriptional regulatory
- gene ontology
- microarray data analysis
- development environments
- genome wide
- gene expression analysis
- gene expression profiles
- wireless sensor networks
- sequence similarity
- genomic data
- sequence alignment
- systems biology
- microarray
- feature selection