FPGA-based PairHMM Forward Algorithm for DNA Variant Calling.
Davide SampietroChiara CrippaLorenzo Di TucciEmanuele Del SozzoMarco D. SantambrogioPublished in: ASAP (2018)
Keyphrases
- computational cost
- high accuracy
- objective function
- preprocessing
- learning algorithm
- optimal solution
- times faster
- ant colony optimization
- clustering method
- experimental evaluation
- worst case
- expectation maximization
- dynamic programming
- probabilistic model
- cost function
- simulated annealing
- k means
- convergence rate
- selection algorithm
- hardware implementation
- theoretical analysis
- evolutionary algorithm
- search space
- classification algorithm
- matching algorithm
- search algorithm
- recognition algorithm