ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction.
Saman FarahmandTodd RileyKourosh ZarringhalamPublished in: J. Biomed. Informatics (2020)
Keyphrases
- gene regulatory
- transcription factors
- biomedical literature
- text mining
- gene regulation
- binding sites
- automatic extraction
- protein interaction
- microarray
- regulatory networks
- gene expression
- genome wide
- biological processes
- dna sequences
- computational biology
- transcription factor binding sites
- component analysis
- systems biology
- information extraction
- natural language processing
- text documents
- machine learning
- co occurrence
- data mining
- saccharomyces cerevisiae
- highly correlated
- information retrieval
- document clustering
- cell cycle
- protein protein interaction networks
- knowledge discovery
- motif discovery
- gene regulatory networks
- gene expression data
- high throughput
- data analysis
- statistically significant
- sequence data
- microarray data