RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling.
Dengke ZhaoWilliam D. BaezKurt FredrickRalf BundschuhPublished in: Bioinform. (2019)
Keyphrases
- cost function
- optimization algorithm
- search space
- optimal solution
- convex hull
- high accuracy
- dynamic programming
- probabilistic model
- computationally efficient
- theoretical analysis
- worst case
- np hard
- improved algorithm
- single pass
- path planning
- times faster
- experimental study
- detection algorithm
- learning algorithm
- em algorithm
- linear programming
- experimental evaluation
- significant improvement
- computational complexity
- input data
- simulated annealing
- tree structure
- matching algorithm
- memory requirements
- convergence rate
- bayesian networks
- estimation algorithm
- data sets