AnySeq/GPU: A Novel Approach for Faster Sequence Alignment on GPUs.
André MüllerBertil SchmidtRichard MembarthRoland LeißaSebastian HackPublished in: CoRR (2022)
Keyphrases
- sequence alignment
- gpu accelerated
- graphics processing units
- graphics hardware
- gpu implementation
- pairwise
- graphics processors
- general purpose
- parallel programming
- parallel processing
- dynamic programming
- protein sequences
- real time
- parallel computation
- binding sites
- computing systems
- amino acids
- parallel computing
- parallel implementation
- memory efficient
- multiple alignment
- comparative genomics
- protein structure
- multiple sequence alignment
- phylogenetic analysis
- graphics cards
- cpu implementation
- single instruction multiple data
- heterogeneous computing
- parallel architectures
- massively parallel
- parallel algorithm
- data sets
- commodity hardware
- high performance computing
- learning algorithm