SLIDER: Fast and Efficient Computation of Banded Sequence Alignment.

Mohammed Alser Hasan Hassan Akash Kumar Onur Mutlu Can Alkan

Published in: CoRR (2018)

Keyphrases

efficient computation
sequence alignment
pairwise
protein sequences
dynamic programming
computational efficiency
binding sites
gpu accelerated
amino acids
phylogenetic analysis
databases
protein structure
multiple alignment
window search
data sets
comparative genomics
data streams
database