BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
Marc A. SuchardBenjamin D. RedelingsPublished in: Bioinform. (2006)
Keyphrases
- bayesian inference
- multiple sequence alignment
- probabilistic model
- prior information
- statistical inference
- hyperparameters
- sequence data
- weighted model counting
- bayesian model
- variational inference
- expectation propagation
- variational bayes
- gibbs sampler
- hierarchical bayesian
- probabilistic modeling
- markov networks
- secondary structure
- protein sequences
- pairwise
- markov chain monte carlo
- machine learning
- computational biology
- hidden variables
- particle filter
- bayesian models
- probability distribution
- variational approximation
- learning algorithm