g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines.
Xiaonan JiJames BaileyKotagiri RamamohanaraoPublished in: PRIB (2008)
Keyphrases
- markov chain
- protein classification
- support vector
- learning machines
- string kernels
- kernel methods
- protein sequences
- transition probabilities
- biological sequences
- kernel function
- support vector machine
- state space
- random walk
- probabilistic automata
- svm classifier
- multi class
- loss function
- feature selection
- cross validation
- markov processes
- sequence databases
- transition matrix
- training algorithm
- generalization ability
- classification accuracy
- svm classification
- suffix array
- computational biology
- protein families
- multiple kernel learning
- secondary structure
- grammatical inference
- density estimation
- reinforcement learning