A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
Antoine RecanatiThomas BrülsAlexandre d'AspremontPublished in: Bioinform. (2017)
Keyphrases
- learning algorithm
- detection algorithm
- experimental evaluation
- times faster
- theoretical analysis
- expectation maximization
- linear programming
- worst case
- k means
- matching algorithm
- dynamic programming
- probabilistic model
- search space
- computational complexity
- optimal solution
- clustering method
- long sequences
- optimization algorithm
- improved algorithm
- data sets
- computationally efficient
- particle swarm optimization
- simulated annealing
- computational cost
- np hard
- color images
- image sequences
- neural network