A Block-Based Systolic Array on an HBM2 FPGA for DNA Sequence Alignment.
Riadh Ben AbdelhamidYoshiki YamaguchiPublished in: ARC (2020)
Keyphrases
- systolic array
- sequence alignment
- binding sites
- reconfigurable architecture
- sequence databases
- data flow
- comparative genomics
- parallel architecture
- dna sequences
- pairwise
- phylogenetic analysis
- smith waterman
- gene expression
- dynamic programming
- sequence data
- protein sequences
- biological sequences
- transcription factors
- statistical significance
- amino acids
- multiple sequence alignment
- sequence analysis
- multiple alignment
- gpu accelerated
- microarray
- parallel processing
- hardware implementation
- pattern recognition