ALPHA: A Novel Algorithm-Hardware Co-Design for Accelerating DNA Seed Location Filtering.
Fazal HameedAsif Ali KhanJerónimo CastrillónPublished in: IEEE Trans. Emerg. Top. Comput. (2022)
Keyphrases
- times faster
- cost function
- learning algorithm
- filtering algorithm
- search space
- computational complexity
- computational cost
- detection algorithm
- optimization algorithm
- input data
- hardware implementation
- experimental evaluation
- dynamic programming
- optimal solution
- objective function
- significant improvement
- hardware and software
- low cost
- k means
- recognition algorithm
- preprocessing
- theoretical analysis
- matching algorithm
- clustering method
- random number generator
- gene expression
- tree structure
- segmentation algorithm
- expectation maximization
- particle swarm optimization
- high accuracy
- worst case
- lower bound
- similarity measure