Protein Structure Prediction on GPU: A Declarative Approach in a Multi-agent Framework.
Federico CampeottoAgostino DovierEnrico PontelliPublished in: ICPP (2013)
Keyphrases
- protein structure prediction
- protein sequences
- protein structure
- protein fold recognition
- drug design
- protein homology
- computational biology
- coarse grained
- real time
- amino acids
- knowledge representation
- graphics hardware
- graph theory
- high level
- protein folding
- parallel implementation
- fine grained
- gpu implementation
- parallel computing
- secondary structure
- amino acid sequences
- parallel processing
- co occurrence
- graphics processors
- artificial intelligence
- molecular biology
- sequence alignment
- graphics processing units
- natural language processing
- pairwise
- optimal solution
- genetic algorithm