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Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.

Marek PalkowskiWlodzimierz Bielecki
Published in: J. Comput. Biol. (2018)
Keyphrases
  • smith waterman
  • sequence alignment
  • similarity measure
  • dynamic programming
  • optimal solution
  • k means
  • lower bound
  • multiple sequence alignment
  • machine learning
  • objective function
  • np hard
  • tree structure