A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes.
Gert ThijsKathleen MarchalMagali LescotStephane RombautsBart De MoorPierre RouzéYves MoreauPublished in: RECOMB (2001)
Keyphrases
- transcription factor binding sites
- dna sequences
- coding regions
- binding sites
- protein coding regions
- explicitly represented
- detection method
- rna sequences
- complex background
- gene expression
- structural motifs
- markov random field
- microarray gene expression data
- regulatory networks
- microarray data
- regulatory elements
- functional properties
- data sets
- gene expression data
- gene ontology
- motif discovery
- genome sequences
- gene regulation
- gene regulatory networks
- sequence data
- biomedical literature
- pattern discovery
- genomic sequences
- dna binding
- detection algorithm
- cis regulatory
- microarray datasets