tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor.
Antti HonkelaPei GaoJonatan RopponenMagnus RattrayNeil D. LawrencePublished in: Bioinform. (2011)
Keyphrases
- gaussian process
- covariance function
- expectation propagation
- transcription factors
- gaussian processes
- regression model
- gene sets
- binding sites
- approximate inference
- bayesian framework
- microarray
- genome wide
- hyperparameters
- model selection
- latent variables
- dna sequences
- component analysis
- image reconstruction
- gene expression
- semi supervised
- high throughput
- bayesian inference
- biomedical literature
- dynamic bayesian networks
- probabilistic inference
- high resolution
- cross validation
- computational biology
- prior knowledge
- co occurrence