BioBlaze: Multi-core SIMD ASIP for DNA sequence alignment.
Nuno NevesNuno SebastiãoAndre PatricioDavid Martins de MatosPedro TomásPaulo F. FloresNuno RomaPublished in: ASAP (2013)
Keyphrases
- sequence alignment
- binding sites
- sequence databases
- comparative genomics
- pairwise
- phylogenetic analysis
- dynamic programming
- gpu accelerated
- dna sequences
- parallel algorithm
- protein sequences
- gene expression
- smith waterman
- multiple alignment
- sequence data
- parallel processing
- amino acids
- biological sequences
- multiple sequence alignment
- dna computing
- massively parallel
- parallel implementation
- protein structure
- microarray data
- high dimensional
- real time