bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming.
Jun GaoQingchen ZhangMin LiuLixin ZhuDingfeng WuZhiwei CaoRuixin ZhuPublished in: J. Cheminformatics (2016)
Keyphrases
- coding regions
- binding sites
- sequence alignment
- rna sequences
- secondary structure
- dna sequences
- protein sequences
- protein interaction
- predicting protein
- protein protein
- experimentally determined
- dna binding
- remote homology detection
- gene expression
- rna secondary structures
- protein structure prediction
- regulatory elements
- transcription factor binding sites
- transcription factors
- psi blast
- statistical significance
- motif discovery
- sequence data
- amino acid sequences
- protein structure
- amino acids
- multiple sequence alignments
- biological sequences
- contact map
- statistically significant
- sequence similarity
- sequence databases
- computational methods
- drug design
- protein interaction networks
- regulatory networks
- drosophila melanogaster
- high precision
- influenza virus