An optimized algorithm for detecting and annotating regional differential methylation.
Sheng LiFrancine E. Garrett-BakelmanAltuna AkalinPaul ZumboRoss LevineBik L. ToIan D. LewisAnna L. BrownRichard J. D'AndreaAri MelnickChristopher E. MasonPublished in: BMC Bioinform. (2013)
Keyphrases
- learning algorithm
- dynamic programming
- times faster
- detection algorithm
- optimal solution
- experimental evaluation
- preprocessing
- experimental study
- significant improvement
- cost function
- optimization algorithm
- computational cost
- image processing
- ant colony optimization
- similarity measure
- theoretical analysis
- expectation maximization
- linear programming
- objective function
- np hard
- k means
- computational complexity
- search space
- classification algorithm