Multiple Sequence Alignment Based on Dynamic Programming Using FPGA.
Shingo MasunoTsutomu MaruyamaYoshiki YamaguchiAkihiko KonagayaPublished in: IEICE Trans. Inf. Syst. (2007)
Keyphrases
- multiple sequence alignment
- dynamic programming
- sequence alignment
- protein sequences
- memory efficient
- genetic algorithm
- secondary structure
- high speed
- biological sequences
- multiple alignment
- state space
- computational biology
- low cost
- greedy algorithm
- multiple sequence alignments
- reinforcement learning
- pairwise
- databases
- sequence data
- phylogenetic trees
- association rules
- neural network