TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
Matthew G. SeetinDavid H. MathewsPublished in: Bioinform. (2012)
Keyphrases
- rna secondary structures
- rna secondary structure prediction
- rna sequences
- rna structures
- secondary structure
- dna sequences
- edit distance
- stochastic context free grammars
- protein sequences
- free energy
- rna molecules
- hidden markov models
- computational methods
- long range
- protein structure
- parameter estimation
- nearest neighbor