De Novo Short Read Assembly Algorithm with Low Memory Usage.
Yuki EndoFubito ToyamaChikafumi ChibaHiroshi MoriKenji ShojiPublished in: BIOINFORMATICS (2014)
Keyphrases
- memory usage
- learning algorithm
- memory footprint
- memory requirements
- computational complexity
- preprocessing
- times faster
- improved algorithm
- search space
- np hard
- experimental evaluation
- detection algorithm
- simulated annealing
- high accuracy
- computational cost
- significant improvement
- classification algorithm
- probabilistic model
- worst case
- k means
- ant colony optimization
- matching algorithm
- lower bound
- optimal solution
- objective function
- similarity measure