HiChIP-Peaks: a HiChIP peak calling algorithm.
Chenfu ShiMagnus RattrayGisela OrozcoPublished in: Bioinform. (2020)
Keyphrases
- improved algorithm
- times faster
- detection algorithm
- learning algorithm
- preprocessing
- optimal solution
- matching algorithm
- dynamic programming
- experimental evaluation
- theoretical analysis
- high accuracy
- expectation maximization
- linear programming
- data sets
- probabilistic model
- cost function
- single pass
- least squares
- space complexity
- similarity measure
- recognition algorithm
- objective function
- data streams
- tree structure
- experimental study
- clustering method
- lower bound
- optimization algorithm
- search space
- significant improvement
- simulated annealing