A stochastic de novo assembly algorithm for viral-sized genomes obtains correct genomes and builds consensus.
Doina BucurPublished in: Inf. Sci. (2017)
Keyphrases
- computational cost
- k means
- computational complexity
- learning algorithm
- recognition algorithm
- monte carlo
- worst case
- preprocessing
- matching algorithm
- optimization algorithm
- high accuracy
- optimal solution
- experimental evaluation
- np hard
- similarity measure
- cost function
- human genome
- segmentation algorithm
- significant improvement
- detection algorithm
- clustering method
- decision trees
- search space
- neural network
- stochastic approximation
- similarity search
- expectation maximization
- particle swarm optimization