Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment.
Manuel CostanzoEnzo RucciCarlos García SánchezMarcelo R. NaioufManuel Prieto-MatíasPublished in: CoRR (2022)
Keyphrases
- sequence alignment
- comparative genomics
- protein structure prediction
- pairwise
- dynamic programming
- amino acids
- protein sequences
- binding sites
- computer architecture
- phylogenetic analysis
- multiple alignment
- biological systems
- biological data
- molecular biology
- multiple sequence alignment
- real time
- gpu accelerated
- systems biology
- multi core processors