QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads.
Xiaoli JiaoHiromi ImamichiBrad T. ShermanRishub NaharRobin L. DewarH. Clifford LaneTomozumi ImamichiWeizhong ChangPublished in: Bioinform. (2022)
Keyphrases
- spectral clustering
- pairwise
- data clustering
- clustering method
- clustering algorithm
- similarity matrix
- image segmentation
- eigendecomposition
- k means
- normalized cut
- graph laplacian
- affinity matrix
- constrained spectral clustering
- clustering quality
- pairwise constraints
- alternative clusterings
- computer vision
- semi supervised
- spectral methods
- evolutionary clustering
- graph partitioning
- nonnegative matrix factorization
- label propagation
- similarity measure
- laplacian matrix
- high throughput sequencing