Multiple Alignment of Sequences by a Continuous Optimisation Approach based on DC Programming and DCA.
Le Thi Hoai AnMoulay BelghitiPham Dinh TaoPublished in: BIOCOMP (2009)
Keyphrases
- multiple alignment
- protein sequences
- multiple sequence alignment
- sequence alignment
- dc programming
- sequential pattern mining
- mining sequential patterns
- secondary structure
- graph theoretic
- scoring function
- sequential patterns
- genetic algorithm
- biological sequences
- computational biology
- protein structure
- web logs
- convex functions
- exact penalty
- machine learning
- packing problem
- piecewise linear
- amino acids
- memory efficient
- sequence databases
- dynamic programming
- search space
- pairwise