CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images.
Michael Y. LeeJacob S. BediaSalil S. BhateGraham L. BarlowDarci PhillipsWendy J. FantlGarry P. NolanChristian M. SchürchPublished in: BMC Bioinform. (2022)
Keyphrases
- pre trained
- image analysis
- segmentation method
- input image
- segmentation algorithm
- microscope images
- pixel level
- test images
- cell nuclei
- cell nucleus
- microscopy images
- three dimensional
- image features
- partial occlusion
- image matching
- image segmentation
- small number
- image retrieval
- object segmentation
- decision trees
- training examples
- lighting conditions
- image set
- training data
- computer vision