ALIGN_MTX - An optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignment.
Boris VishnepolskyMalak PirtskhalavaPublished in: Comput. Biol. Chem. (2009)
Keyphrases
- sequence alignment
- pairwise
- dynamic programming
- multiple alignment
- gpu accelerated
- phylogenetic analysis
- protein sequences
- multiple sequence alignment
- amino acids
- optimal solution
- similarity measure
- sequence databases
- multiple sequence alignments
- binding sites
- protein structure prediction
- markov random field
- statistical significance
- worst case
- upper bound
- global alignment
- protein classification
- comparative genomics