Developing new genetic algorithm based on integer programming for multiple sequence alignment.
S. Ali LajevardyMehrdad KargariPublished in: Soft Comput. (2022)
Keyphrases
- optimal solution
- integer programming
- multiple sequence alignment
- np hard
- linear programming
- protein sequences
- memory efficient
- column generation
- linear program
- biological sequences
- genetic algorithm
- objective function
- multiple alignment
- computational biology
- constraint programming
- scheduling problem
- secondary structure
- integer program
- cutting plane algorithm
- upper bound
- phylogenetic trees
- constraint satisfaction
- sequence alignment
- evolutionary algorithm
- pairwise
- learning algorithm
- neural network