DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants.
Endre BartaEndre SebestyénTamás B. PálfyGábor TóthCsaba P. OrtutayLászló PatthyPublished in: Nucleic Acids Res. (2005)
Keyphrases
- transcription factor binding sites
- databases
- sequence similarity
- binding sites
- comparative genomics
- dna sequences
- regulatory elements
- sequence alignment
- gene clusters
- clustering algorithm
- sequence data
- biological sequences
- computational methods
- relational databases
- data collections
- human genome
- database
- transcription factors
- gene expression
- cis regulatory
- metadata
- alternative splicing
- cluster analysis
- heterogeneous collections
- supply chain
- genomic sequences
- fuzzy clustering
- information retrieval
- hidden markov models
- document clustering
- knowledge discovery
- database systems
- gene regulation
- genome wide
- secondary structure
- statistical significance
- biological data
- hierarchical clustering
- data management
- data sources