A kinetic model-based algorithm to classify NGS short reads by their allele origin.
Andrea MarinoniEttore RizzoIvan LimongelliPaolo GambaRiccardo BellazziPublished in: J. Biomed. Informatics (2015)
Keyphrases
- computational cost
- preprocessing
- k means
- experimental evaluation
- np hard
- dynamic programming
- matching algorithm
- times faster
- simulated annealing
- convex hull
- significant improvement
- detection algorithm
- clustering method
- monte carlo
- segmentation algorithm
- optimization algorithm
- theoretical analysis
- classification algorithm
- high accuracy
- probabilistic model
- learning algorithm
- improved algorithm
- model free
- linear programming
- particle swarm optimization
- maximum likelihood
- data sets
- motion estimation
- cost function
- neural network