An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.
Brian D. OndovCharles CochranMark LandersGavin D. MeredithMiroslav DudasNicholas H. BergmanPublished in: Bioinform. (2010)
Keyphrases
- detection algorithm
- times faster
- segmentation algorithm
- significant improvement
- image alignment
- matching algorithm
- high accuracy
- cost function
- dynamic programming
- three dimensional
- worst case
- computational cost
- np hard
- k means
- objective function
- similarity measure
- learning algorithm
- linear programming
- preprocessing
- optimization algorithm
- computational complexity
- recognition algorithm
- scheduling problem
- lower bound
- simulated annealing
- particle swarm optimization