Smoothing 3D Protein Structure Motifs Through Graph Mining and Amino Acid Similarities.
Wajdi DhifliRabie SaidiEngelbert Mephu NguifoPublished in: J. Comput. Biol. (2014)
Keyphrases
- graph mining
- protein structure
- amino acids
- protein families
- biological networks
- protein sequences
- graph databases
- secondary structure
- pattern mining
- molecular biology
- protein structure prediction
- protein data bank
- protein function
- amino acid sequences
- connected components
- sequence alignment
- graph data
- protein folding
- link prediction
- similarity measure
- pattern discovery
- frequent subgraphs
- amino acid residues
- contact map
- dna sequences
- link analysis
- functional modules
- computational approaches
- motif discovery
- community detection
- computational biology
- graph patterns
- tertiary structure
- physico chemical
- data structure
- binding sites
- experimentally determined