Back translated peptide K-mer search and local alignment in large DNA sequence databases using BoND-SD-tree indexing.
A. K. M. Tauhidul IslamSakti PramanikXinge JiJames R. ColeQiang ZhuPublished in: BIBE (2015)
Keyphrases
- sequence databases
- indexing methods
- protein sequences
- sequence data
- similarity search
- biological sequences
- search tools
- sequential patterns
- sequential pattern mining
- database
- indexing structure
- subsequence matching
- biological data
- amino acids
- r tree
- sequence alignment
- indexing method
- indexing techniques
- smith waterman
- information retrieval
- search methods
- index structure
- search algorithm
- graph databases
- text collections
- query processing
- inverted file
- similarity measure
- high dimensional data
- suffix tree
- multi dimensional
- end users
- data model
- pairwise
- data structure