A high-performance FPGA-based BWA-MEM DNA sequence alignment.
Cuong Pham-QuocBinh Kieu-DoTran Ngoc ThinhPublished in: Concurr. Comput. Pract. Exp. (2021)
Keyphrases
- sequence alignment
- binding sites
- sequence databases
- comparative genomics
- dna sequences
- protein sequences
- pairwise
- phylogenetic analysis
- gene expression
- smith waterman
- biological sequences
- sequence analysis
- multiple sequence alignment
- dna computing
- statistical significance
- amino acids
- application specific
- sequence data
- dynamic programming
- gpu accelerated
- hardware implementation
- multiple alignment
- genetic algorithm
- multi dimensional
- field programmable gate array
- coarse grained
- cluster analysis